66 constexpr
dna5() noexcept = default;
67 constexpr
dna5(
dna5 const &) noexcept = default;
69 constexpr
dna5 & operator=(
dna5 const &) noexcept = default;
70 constexpr
dna5 & operator=(
dna5 &&) noexcept = default;
71 ~
dna5() noexcept = default;
77 constexpr
dna5(t const & r) noexcept
115 ret[
'U'] = ret[
'T']; ret[
'u'] = ret[
't'];
146 constexpr
dna5 operator""_dna5(
char const c) noexcept
165 for (
size_t i = 0; i < n; ++i)
166 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const c) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:158
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:197
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition: alphabet_base.hpp:185
The five letter DNA alphabet of A,C,G,T and the unknown character N.
Definition: dna5.hpp:49
constexpr dna5() noexcept=default
Defaulted.
static constexpr std::array< rank_type, 256 > char_to_rank
Char to value conversion table.
Definition: dna5.hpp:98
static const std::array< dna5, alphabet_size > complement_table
The complement table.
Definition: dna5.hpp:123
static constexpr char_type rank_to_char[alphabet_size]
Value to char conversion table.
Definition: dna5.hpp:88
friend base_t
Befriend seqan3::nucleotide_base.
Definition: dna5.hpp:55
friend rna5
Befriend seqan3::rna5 so it can copy char_to_rank.
Definition: dna5.hpp:60
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:41
alphabet_base< dna5, size, char > base_t
Type of the base class.
Definition: nucleotide_base.hpp:44
The five letter RNA alphabet of A,C,G,U and the unknown character N.
Definition: rna5.hpp:47
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:81
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.